Sphingobium vulgare sp. nov., isolated from freshwater sediment

Int J Syst Evol Microbiol. 2010 Oct;60(Pt 10):2473-2477. doi: 10.1099/ijs.0.016816-0. Epub 2009 Nov 27.

Abstract

A Gram-negative, motile, non-spore-forming bacterial strain, designated HU1-GD12(T), was isolated from freshwater sediment. The strain was characterized by using a polyphasic approach in order to determine its taxonomic position. Comparative analysis of the 16S rRNA gene sequence showed that the isolate constituted a distinct branch within the genus Sphingobium, showing the highest level of sequence similarity with respect to Sphingobium ummariense RL-3(T) (96.2 %). Strain HU1-GD12(T) had a genomic DNA G+C content of 66.8 mol% and Q-10 as the predominant respiratory quinone. Furthermore, the major polyamine component (spermidine) in the cytoplasm and the presence of sphingoglycolipids suggested that strain HU1-GD12(T) belonged to the family Sphingomonadaceae. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain HU1-GD12(T) represents a novel species of the genus Sphingobium, for which the name Sphingobium vulgare sp. nov. is proposed. The type strain is HU1-GD12(T) (=LMG 24321(T)=KCTC 22289(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Cluster Analysis
  • Cytoplasm / chemistry
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fresh Water / microbiology*
  • Geologic Sediments / microbiology*
  • Glycosphingolipids / analysis
  • Locomotion
  • Molecular Sequence Data
  • Phylogeny
  • Polyamines / analysis
  • Quinones / analysis
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sphingomonadaceae / chemistry
  • Sphingomonadaceae / classification*
  • Sphingomonadaceae / genetics
  • Sphingomonadaceae / isolation & purification*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Glycosphingolipids
  • Polyamines
  • Quinones
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/FJ177535