A minimal sequence code for switching protein structure and function

Proc Natl Acad Sci U S A. 2009 Dec 15;106(50):21149-54. doi: 10.1073/pnas.0906408106. Epub 2009 Nov 18.

Abstract

We present here a structural and mechanistic description of how a protein changes its fold and function, mutation by mutation. Our approach was to create 2 proteins that (i) are stably folded into 2 different folds, (ii) have 2 different functions, and (iii) are very similar in sequence. In this simplified sequence space we explore the mutational path from one fold to another. We show that an IgG-binding, 4beta+alpha fold can be transformed into an albumin-binding, 3-alpha fold via a mutational pathway in which neither function nor native structure is completely lost. The stabilities of all mutants along the pathway are evaluated, key high-resolution structures are determined by NMR, and an explanation of the switching mechanism is provided. We show that the conformational switch from 4beta+alpha to 3-alpha structure can occur via a single amino acid substitution. On one side of the switch point, the 4beta+alpha fold is >90% populated (pH 7.2, 20 degrees C). A single mutation switches the conformation to the 3-alpha fold, which is >90% populated (pH 7.2, 20 degrees C). We further show that a bifunctional protein exists at the switch point with affinity for both IgG and albumin.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Humans
  • Immunoglobulin G
  • Magnetic Resonance Spectroscopy
  • Mutagenesis, Site-Directed
  • Mutation*
  • Protein Conformation
  • Protein Engineering / methods
  • Protein Folding*
  • Protein Stability
  • Recombinant Fusion Proteins / chemistry*
  • Recombinant Fusion Proteins / genetics*
  • Recombinant Fusion Proteins / physiology
  • Serum Albumin
  • Subtilisin / genetics*

Substances

  • Immunoglobulin G
  • Recombinant Fusion Proteins
  • Serum Albumin
  • Subtilisin