PDBselect 1992-2009 and PDBfilter-select

Sven Griep; Uwe Hobohm

doi:10.1093/nar/gkp786

PDBselect 1992-2009 and PDBfilter-select

Nucleic Acids Res. 2010 Jan;38(Database issue):D318-9. doi: 10.1093/nar/gkp786. Epub 2009 Sep 25.

Authors

Sven Griep¹, Uwe Hobohm

Affiliation

¹ University of Applied Sciences Giessen, Bioinformatics, D-35390 Giessen, Germany.

Abstract

PDBselect (http://bioinfo.tg.fh-giessen.de/pdbselect/) is a list of representative protein chains with low mutual sequence identity selected from the protein data bank (PDB) to enable unbiased statistics. The list increased from 155 chains in 1992 to more than 4500 chains in 2009. PDBfilter-select is an online service to generate user-defined selections.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Animals
Computational Biology / methods*
Computational Biology / trends
Databases, Genetic*
Databases, Protein*
Humans
Information Storage and Retrieval / methods
Internet
Online Systems
Protein Structure, Tertiary
Proteins / chemistry*
Software
User-Computer Interface

Substances

Proteins