Conformational conversion of DNA G-quadruplex induced by a cationic porphyrin

Spectrochim Acta A Mol Biomol Spectrosc. 2009 Sep 15;74(1):243-7. doi: 10.1016/j.saa.2009.06.018. Epub 2009 Jun 16.

Abstract

The interactions between cationic meso-tetrakis(4-(N-methylpyridiumyl))porphyrin (TMPyP4) and the G-quadruplex (G4) of human telomeric single-strand oligonucleotide d(TTAGGG)(2) (S12) have been investigated by means of circular dichroism (CD), UV-visible absorption and fluorescence spectroscopies. It is found that TMPyP4 can preferentially induce the conformational conversion of the G4 structure from the parallel type to the parallel/antiparallel mixture in the presence of K(+), and that it can directly induce the formation of antiparallel G4 structure from the single-strand oligonucleotide S12 in the absence of K(+). Furthermore, the comparable experiments of TMPyP4 with two single-strand oligonucleotides S6 d(TTAGGG) and S24 d(TAGGG(TTAGGG)(3)T) in the absence of K(+) show that TMPyP4 can also induce the formation of antiparallel G4 from S24 but not from S6, indicating that the end-loops of the G4 structure are the key factors for the formation of G4 induced by TMPyP4.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Circular Dichroism
  • DNA, Single-Stranded / chemistry
  • DNA, Single-Stranded / drug effects
  • DNA, Single-Stranded / metabolism
  • G-Quadruplexes*
  • Humans
  • Models, Biological
  • Molecular Structure
  • Nucleic Acid Conformation / drug effects*
  • Porphyrins / chemistry
  • Porphyrins / metabolism
  • Porphyrins / pharmacology*
  • Potassium / chemistry
  • Potassium / pharmacology

Substances

  • DNA, Single-Stranded
  • Porphyrins
  • porphyrin pi cation radical
  • tetra(4-N-methylpyridyl)porphine
  • Potassium