Dokdonella soli sp. nov., a gammaproteobacterium isolated from soil

Int J Syst Evol Microbiol. 2009 Aug;59(Pt 8):1965-8. doi: 10.1099/ijs.0.005348-0. Epub 2009 Jun 30.

Abstract

An aerobic, Gram-negative, yellow-coloured, rod-shaped bacterial strain, designated KIS28-6T, was isolated from soil from Ulleung, an island located in the East Sea of Korea. A phylogenetic analysis revealed that strain KIS28-6T was a member of the genus Dokdonella, having 16S rRNA gene sequence similarities of 98.1 and 96.9% with respect to Dokdonella fugitiva CIP 108692T and Dokdonella koreensis DSM 17203T, respectively. Strain KIS28-6T showed DNA-DNA hybridization values of 38 and 32% with respect to D. fugitiva CIP 108692T and D. koreensis DSM 17203T, respectively. The major fatty acids (>10%) were iso-C17:1omega9c (35.7%), iso-C17:0 (26.9%) and iso-C15:0 (11.7%), the major respiratory quinone was Q-8 and the DNA G+C content was 73.0 mol%. On the basis of the results obtained in this polyphasic taxonomic analysis, strain KIS28-6T represents a novel species of the genus Dokdonella, for which the name Dokdonella soli sp. nov. is proposed. The type strain is KIS28-6T (=KACC 12741T =JCM 15421T).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aerobiosis
  • Bacterial Typing Techniques
  • Base Composition
  • Cluster Analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Korea
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny
  • Pigments, Biological / biosynthesis
  • Quinones / analysis
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Xanthomonadaceae / chemistry
  • Xanthomonadaceae / classification*
  • Xanthomonadaceae / genetics
  • Xanthomonadaceae / isolation & purification*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Pigments, Biological
  • Quinones
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/EU685334