A consensus linkage map identifies genomic regions controlling fruit maturity and beta-carotene-associated flesh color in melon (Cucumis melo L.)

Theor Appl Genet. 2009 Aug;119(4):741-56. doi: 10.1007/s00122-009-1085-3. Epub 2009 Jun 24.

Abstract

The nutritional value and yield potential of US Western Shipping melon (USWS; Cucumis melo L.) could be improved through the introgression of genes for early fruit maturity (FM) and the enhancement of the quantity of beta-carotene (QbetaC) in fruit mesocarp (i.e., flesh color). Therefore, a set of 116 F(3) families derived from the monoecious, early FM Chinese line 'Q 3-2-2' (no beta-carotene, white mesocarp) and the andromonoecious, late FM USWS line 'Top Mark' (possessing beta-carotene, orange mesocarp) were examined during 2 years in Wisconsin, USA to identify quantitative trait loci (QTL) associated with FM and QbetaC. A 171-point F(2-3) based map was constructed and used for QTL analysis. Three QTL associated with QbetaC were detected, which explained a significant portion of the observed phenotypic variation (flesh color; R (2) = 4.0-50.0%). The map position of one QTL (beta-carM.E.9.1) was uniformly aligned with one carotenoid-related gene (Orange gene), suggesting its likely role in QbetaC in this melon population and putative relationship with the melon white flesh (wf) gene. Two major (FM.6.1 and FM.11.1; R (2) >or= 20%) and one minor QTL (FM.2.1; R (2) = 8%) were found to be associated with FM. This map was then merged with a previous recombinant inbred line (RIL)-based map used to identify seven QTL associated with QbetaC in melon fruit. This consensus map [300 molecular markers (187 co-dominant melon and 14 interspecific; 10 LG)] provides a framework for the further dissection and cloning of published QTL, which will consequently lead to more effective trait introgression in melon.

MeSH terms

  • Analysis of Variance
  • Chromosome Mapping*
  • Cucumis melo / genetics*
  • Cucumis melo / growth & development
  • Epistasis, Genetic
  • Expressed Sequence Tags
  • Fruit / genetics*
  • Fruit / growth & development*
  • Genes, Plant
  • Genome, Plant / genetics*
  • Minisatellite Repeats
  • Pigmentation / genetics*
  • Quantitative Trait Loci / genetics
  • Regression Analysis
  • Synteny / genetics
  • beta Carotene / genetics
  • beta Carotene / metabolism*

Substances

  • beta Carotene