Type I polyketide synthases that require discrete acyltransferases

Methods Enzymol. 2009:459:165-86. doi: 10.1016/S0076-6879(09)04608-4.

Abstract

The diverse structures of polyketide natural products are reflected by the equally diverse polyketide biosynthetic enzymes, namely polyketide synthases (PKSs). Three major classes of PKSs are known-noniterative type I PKSs, iterative type II PKSs and acyl carrier protein-independent type III PKSs, each of which consists of additional variants. One such variant is the noniterative type I PKS in which each PKS module lacks the cognate acyltransferase (AT) domain. The essential AT activity is instead provided by a discrete AT in trans. Termed "AT-less" type I PKSs, the loading of the malonate extender units by the discrete AT enzyme LnmG to each of the AT-less PKS modules of LnmI and LnmJ was confirmed experimentally for biosynthesis of the anticancer antibiotic leinamycin (LNM). The LNM PKS has since served as a model for the continuous discovery of numerous additional AT-less type I PKSs incorporating variable extender units. However, biochemical characterization of AT-less type I PKSs remains very limited, and the mechanism by which AT-less type I PKSs accommodate multiple extender units is unknown. This chapter provides the protocols used to establish and characterize the LNM PKS. Application of these methods to other AT-less type I PKSs should aid the biochemical characterization and hence possible exploitation of these unique PKSs for polyketide natural product structural diversity by combinatorial biosynthetic methods.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Acyl Carrier Protein / chemistry
  • Acyl Carrier Protein / classification
  • Acyl Carrier Protein / genetics
  • Acyl Carrier Protein / metabolism
  • Acyltransferases / chemistry*
  • Acyltransferases / classification
  • Acyltransferases / genetics
  • Acyltransferases / metabolism*
  • Models, Biological
  • Phylogeny
  • Polyketide Synthases / chemistry*
  • Polyketide Synthases / classification
  • Polyketide Synthases / genetics
  • Polyketide Synthases / metabolism*
  • Protein Structure, Tertiary / genetics
  • Protein Structure, Tertiary / physiology
  • Substrate Specificity

Substances

  • Acyl Carrier Protein
  • Polyketide Synthases
  • Acyltransferases