Thalassobacter arenae sp. nov., isolated from sea sand in Korea

Int J Syst Evol Microbiol. 2009 Mar;59(Pt 3):487-90. doi: 10.1099/ijs.0.65841-0.

Abstract

A Gram-negative, short rod-shaped bacterium, strain GA2-M15(T), was isolated from a sea-sand sample at Homi Cape, Pohang city, Republic of Korea. 16S rRNA gene sequence analysis demonstrated that this isolate was unique, showing 95.9 % sequence similarity to the type strain of Thalassobacter stenotrophicus and similarities of 94.0-95.2 % to the type strains of species of the genera Octadecabacter (94.4-95.2 %), Jannaschia (94.0-94.4 %) and Thalassobius (94.0-94.7 %). Chemotaxonomic characteristics (diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and phosphatidylcholine as the major polar lipids and C(18 : 1)omega7c as the predominant fatty acid) and DNA G+C content (56 mol%) were also similar to those of Thalassobacter stenotrophicus. 16S rRNA gene sequence similarity, physiological properties and some fatty acid components showed that strain GA2-M15(T) could be differentiated from Thalassobacter stenotrophicus. On the basis of these results, strain GA2-M15(T) is considered to represent a novel species of the genus Thalassobacter, for which the name Thalassobacter arenae sp. nov. is proposed. The type strain is GA2-M15(T) (=KACC 12675(T) =DSM 19593(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / analysis
  • DNA, Ribosomal Spacer / analysis
  • Fatty Acids / analysis
  • Genes, rRNA
  • Korea
  • Molecular Sequence Data
  • Phenotype
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • RNA, Ribosomal, 23S / genetics
  • Rhodobacteraceae / classification*
  • Rhodobacteraceae / genetics
  • Rhodobacteraceae / isolation & purification
  • Rhodobacteraceae / physiology
  • Seawater
  • Sequence Analysis, DNA
  • Silicon Dioxide*
  • Soil Microbiology*

Substances

  • Bacterial Proteins
  • DNA, Bacterial
  • DNA, Ribosomal Spacer
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • RNA, Ribosomal, 23S
  • Silicon Dioxide

Associated data

  • GENBANK/EU342372