Aptamer selection express: a novel method for rapid single-step selection and sensing of aptamers

J Biomol Tech. 2008 Dec;19(5):311-9.

Abstract

Here we describe a new DNA capture element (DCE) sensing system, based on the quenching and dequenching of a double-stranded aptamer. This system shows very good sensitivity and thermal stability. While quenching, dequenching, and separating the DCE systems made from different aptamers (all selected by SELEX), an alternative method to rapidly select aptamers was developed-the Aptamer Selection Express (ASExp). This process has been used to select aptamers against different types of targets (Bacillus anthracis spores, Bacillus thuringiensis spores, MS-2 bacteriophage, ovalbumin, and botulinum neurotoxin). The DCE systems made from botulinum neurotoxin aptamers selected by ASExp have been investigated. The results of this investigation indicate that ASExp can be used to rapidly select aptamers for the DCE sensing system.

Keywords: ASExp; DCE; SELEX; aptamer.

Publication types

  • Evaluation Study
  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Aptamers, Nucleotide / genetics*
  • Aptamers, Nucleotide / isolation & purification*
  • Bacillus anthracis / genetics
  • Base Sequence
  • Biotechnology
  • Botulinum Toxins / genetics
  • Levivirus / genetics
  • Ovalbumin / genetics
  • Polymerase Chain Reaction
  • SELEX Aptamer Technique / methods*
  • Spores, Bacterial / genetics

Substances

  • Aptamers, Nucleotide
  • Ovalbumin
  • Botulinum Toxins