Diuron biodegradation was studied in activated sludge reactors and the impacts of aerobic and anoxic conditions, presence of supplemental substrate and biomass acclimatization on its removal were investigated. Diuron and three known metabolites, namely DCPMU (1-(3,4-dichlorophenyl)-3-methylurea), DCPU (1-3,4-dichlorophenylurea) and DCA (3,4-dichloroaniline), were extracted by solid-phase extraction (dissolved phase) or sonication (particulate phase) and determined using High Performance Liquid Chromatography-Diode Array Detector (HPLC-DAD). During the experiments only a minor part of these compounds was associated with the suspended solids. Under aerobic conditions, almost 60% of Diuron was biodegraded, while its major metabolite was DCA. The existence of anoxic conditions increased Diuron biodegradation to more than 95%, while the major metabolite was DCPU. Mass balance calculation showed that a significant fraction of Diuron is mineralized or biotransformed to other unknown metabolites. The presence of low concentrations of supplemental substrate did not affect Diuron biodegradation, whereas the acclimatization of biomass slightly accelerated its elimination under anoxic conditions. Calculation of half-lives showed that under aerobic conditions DCPMU, DCPU and DCA are biodegraded much faster than the parent compound. In the future, the sequential use of anoxic and aerobic conditions could provide sufficient removal of Diuron and its metabolites from runoff waters.