Study of spatial organization of chicken alpha-globin gene domain by 3C technique

Biochemistry (Mosc). 2008 Nov;73(11):1192-9. doi: 10.1134/s0006297908110047.

Abstract

This work deals with 3C (Chromosome Conformation Capture) analysis of the chicken alpha-globin gene domain in embryonic erythrocytes and lymphoid cells. Ligation products were quantitatively analyzed by real-time PCR with TaqMan probes. It was found that in lymphoid cells, where alpha-globin gene is not active, the domain has a relatively extended configuration. In embryonic erythrocytes that transcribe alpha(D) and alpha(A) genes, simultaneous interaction of several domain elements was revealed including the major regulatory element, the erythroid-specific DNase I hypersensitive site at a distance of 9 kb upstream from the alpha-globin gene cluster (-9 DHS), promoter of the housekeeping gene CGTHBA, the alpha(D)-globin gene promoter, and the erythroid-specific enhancer located after the alpha-globin gene cluster. We suppose that such interaction is necessary to provide for the active transcription status of the chicken alpha-globin gene domains in erythroid cells.

MeSH terms

  • Animals
  • Cell Line
  • Chick Embryo
  • Chickens / genetics*
  • Chickens / metabolism
  • Chromosome Mapping* / methods
  • Enhancer Elements, Genetic
  • Promoter Regions, Genetic
  • Regulatory Sequences, Nucleic Acid*
  • Transcription, Genetic
  • alpha-Globins / chemistry*
  • alpha-Globins / genetics*
  • alpha-Globins / metabolism

Substances

  • alpha-Globins