AnnotationSketch: a genome annotation drawing library

Bioinformatics. 2009 Feb 15;25(4):533-4. doi: 10.1093/bioinformatics/btn657. Epub 2008 Dec 23.

Abstract

Summary: To analyse the vast amount of genome annotation data available today, a visual representation of genomic features in a given sequence range is required. We developed a C library which provides layout and drawing capabilities for annotation features. It supports several common input and output formats and can easily be integrated into custom C applications. To exemplify the use of AnnotationSketch in other languages, we provide bindings to the scripting languages Ruby, Python and Lua.

Availability: The software is available under an open-source license as part of GenomeTools (http://genometools.org/annotationsketch.html).

MeSH terms

  • Computer Graphics
  • Databases, Factual
  • Gene Expression Profiling / methods
  • Genome*
  • Programming Languages
  • Software*
  • User-Computer Interface