Base-modified DNA labeled by [Ru(bpy)(3)](2+) and [Os(bpy)(3)](2+) complexes: construction by polymerase incorporation of modified nucleoside triphosphates, electrochemical and luminescent properties, and applications

Chemistry. 2009;15(5):1144-54. doi: 10.1002/chem.200801538.

Abstract

Modified 2'-deoxynucleoside triphosphates (dNTPs) bearing [Ru(bpy)(3)](2+) and [Os(bpy)(3)](2+) complexes attached via an acetylene linker to the 5-position of pyrimidines (C and U) or to the 7-position of 7-deazapurines (7-deaza-A and 7-deaza-G) have been prepared in one step by aqueous cross-couplings of halogenated dNTPs with the corresponding terminal acetylenes. Polymerase incorporation by primer extension using Vent (exo-) or Pwo polymerases gave DNA labeled in specific positions with Ru(2+) or Os(2+) complexes. Square-wave voltammetry could be efficiently used to detect these labeled nucleic acids by reversible oxidations of Ru(2+/3+) or Os(2+/3+). The redox potentials of the Ru(2+) complexes (1.1-1.25 V) are very close to that of G oxidation (1.1 V), while the potentials of Os(2+) complexes (0.75 V) are sufficiently different to enable their independent detection. On the other hand, Ru(2+)-labeled DNA can be independently analyzed by luminescence. In combination with previously reported dNTPs bearing ferrocene, aminophenyl, and nitrophenyl tags, the Os-labeled dATP has been successfully used for "multicolor" redox labeling of DNA and for DNA minisequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Color
  • Cross-Linking Reagents / chemistry
  • DNA / chemistry*
  • DNA-Directed DNA Polymerase / chemistry
  • Electrochemistry
  • Luminescence
  • Oligonucleotides / chemistry
  • Osmium / chemistry*
  • Oxidation-Reduction
  • Ruthenium / chemistry*
  • Staining and Labeling / methods*

Substances

  • Cross-Linking Reagents
  • Oligonucleotides
  • Osmium
  • Ruthenium
  • DNA
  • DNA-Directed DNA Polymerase