[Oligonucleotide primers for detection and amplification of the emoA gene encoding bacterial ethylenediaminetetraacetate monooxygenase]

Prikl Biokhim Mikrobiol. 2008 Jul-Aug;44(4):399-403.
[Article in Russian]

Abstract

A system of primers was designed on the basis of analysis of nucleotide sequences of the emoA gene encoding ethylenediaminetetraacetate (EDTA) monooxygenase, which are deposited in GenBank. This system of primers makes it possible to obtain emoA gene fragments approximately 750 bp long for bacterial destructors of EDTA. Polymerase chain reaction (PCR) of total DNA isolated from enrichment and pure cultures showed that this system can be effectively used for detecting the emoA gene in representatives of Alpha- and Gammaproteobacteria. Partial sequences of emoA genes of bacteria of the genera Chelativorans and Stenotrophomonas, which are able to degrade this pollutant, have been sequenced and deposited in GenBank.

Publication types

  • English Abstract
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / isolation & purification
  • Bacterial Proteins / metabolism*
  • Base Sequence
  • Biodegradation, Environmental
  • Chelating Agents / metabolism*
  • DNA Primers / chemistry*
  • Edetic Acid / metabolism*
  • Environmental Pollutants / metabolism*
  • Molecular Sequence Data
  • Oxygenases / isolation & purification
  • Oxygenases / metabolism*
  • Phylogeny
  • Proteobacteria / enzymology
  • Pseudomonas / enzymology

Substances

  • Bacterial Proteins
  • Chelating Agents
  • DNA Primers
  • Environmental Pollutants
  • Edetic Acid
  • Oxygenases

Associated data

  • GENBANK/EU025071
  • GENBANK/EU030673
  • GENBANK/EU030674
  • GENBANK/EU030675
  • GENBANK/EU030676