SynBioSS: the synthetic biology modeling suite

Anthony D Hill; Jonathan R Tomshine; Emma M B Weeding; Vassilios Sotiropoulos; Yiannis N Kaznessis

doi:10.1093/bioinformatics/btn468

SynBioSS: the synthetic biology modeling suite

Bioinformatics. 2008 Nov 1;24(21):2551-3. doi: 10.1093/bioinformatics/btn468. Epub 2008 Aug 30.

Authors

Anthony D Hill¹, Jonathan R Tomshine, Emma M B Weeding, Vassilios Sotiropoulos, Yiannis N Kaznessis

Affiliation

¹ Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Ave. SE, Minneapolis, MN 55455-0132, USA.

PMID: 18757873
DOI: 10.1093/bioinformatics/btn468

Abstract

SynBioSS (Synthetic Biology Software Suite) is a suite of software for the modeling and simulation of synthetic genetic constructs. SynBioSS utilizes the registry of standard biological parts, a database of kinetic parameters, and both graphical and command-line interfaces to multiscale simulation algorithms.

Availability: SynBioSS is available under the GNU General Public License at http://synbioss.sourceforge.net.

Publication types

Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

Algorithms
Computer Simulation
Databases, Genetic
Gene Regulatory Networks*
Models, Genetic*
Software*
User-Computer Interface