Aromatic amino acid-dependent expression of indole-3-pyruvate decarboxylase is regulated by TyrR in Enterobacter cloacae UW5

J Bacteriol. 2008 Nov;190(21):7200-8. doi: 10.1128/JB.00804-08. Epub 2008 Aug 29.

Abstract

The plant growth-promoting rhizobacterium Enterobacter cloacae UW5 synthesizes the plant growth hormone indole-3-acetic acid (IAA) via the indole-3-pyruvate pathway utilizing the enzyme indole-3-pyruvate decarboxylase that is encoded by ipdC. In this bacterium, ipdC expression and IAA production occur in stationary phase and are induced by an exogenous source of tryptophan, conditions that are present in the rhizosphere. The aim of this study was to identify the regulatory protein that controls the expression of ipdC. We identified a sequence in the promoter region of ipdC that is highly similar to the recognition sequence for the Escherichia coli regulatory protein TyrR that regulates genes involved in aromatic amino acid transport and metabolism. Using a tyrR insertional mutant, we demonstrate that TyrR is required for IAA production and for induction of ipdC transcription. TyrR directly induces ipdC expression, as was determined by real-time quantitative reverse transcription-PCR, by ipdC promoter-driven reporter gene activity, and by electrophoretic mobility shift assays. Expression increases in response to tryptophan, phenylalanine, and tyrosine. This suggests that, in addition to its function in plant growth promotion, indolepyruvate decarboxylase may be important for aromatic amino acid uptake and/or metabolism.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acids, Aromatic / pharmacology*
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Base Sequence
  • Carboxy-Lyases / genetics*
  • Carboxy-Lyases / metabolism
  • Electrophoretic Mobility Shift Assay
  • Enterobacter cloacae / enzymology
  • Enterobacter cloacae / genetics*
  • Enterobacter cloacae / metabolism
  • Gene Expression Regulation, Bacterial / drug effects
  • Indoleacetic Acids / metabolism
  • Mutation
  • Phenylalanine / pharmacology
  • Promoter Regions, Genetic / genetics
  • Protein Binding
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Tryptophan / pharmacology
  • Tyrosine / pharmacology

Substances

  • Amino Acids, Aromatic
  • Bacterial Proteins
  • Indoleacetic Acids
  • Tyrosine
  • Phenylalanine
  • indoleacetic acid
  • Tryptophan
  • indolepyruvate decarboxylase
  • Carboxy-Lyases