Cloning and characterization of a novel L-arabinose isomerase from Bacillus licheniformis

Appl Microbiol Biotechnol. 2008 Nov;81(2):283-90. doi: 10.1007/s00253-008-1652-6. Epub 2008 Aug 21.

Abstract

Based on analysis of the genome sequence of Bacillus licheniformis ATCC 14580, an isomerase-encoding gene (araA) was proposed as an L-arabinose isomerase (L-AI). The identified araA gene was cloned from B. licheniformis and overexpressed in Escherichia coli. DNA sequence analysis revealed an open reading frame of 1,422 bp, capable of encoding a polypeptide of 474 amino acid residues with a calculated isoelectric point of pH 4.8 and a molecular mass of 53,500 Da. The gene was overexpressed in E. coli, and the protein was purified as an active soluble form using Ni-NTA chromatography. The molecular mass of the purified enzyme was estimated to be approximately 53 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and 113 kDa by gel filtration chromatography, suggesting that the enzyme is a homodimer. The enzyme required a divalent metal ion, either Mn(2+)or Co(2+), for enzymatic activity. The enzyme had an optimal pH and temperature of 7.5 and 50 degrees C, respectively, with a k (cat) of 12,455 min(-1) and a k (cat)/K (m) of 34 min(-1) mM(-1) for L-arabinose, respectively. Although L-AIs have been characterized from several other sources, B. licheniformis L-AI is distinguished from other L-AIs by its wide pH range, high substrate specificity, and catalytic efficiency for L-arabinose, making B. licheniformis L-AI the ideal choice for industrial applications, including enzymatic synthesis of L-ribulose. This work describes one of the most catalytically efficient L-AIs characterized thus far.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aldose-Ketose Isomerases / chemistry
  • Aldose-Ketose Isomerases / genetics*
  • Aldose-Ketose Isomerases / metabolism*
  • Arabinose / metabolism
  • Bacillus / enzymology*
  • Bacillus / genetics
  • Chromatography, Gel
  • Cloning, Molecular
  • Cobalt / pharmacology
  • Coenzymes / pharmacology
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Dimerization
  • Electrophoresis, Polyacrylamide Gel
  • Enzyme Stability
  • Escherichia coli / genetics
  • Gene Expression
  • Hydrogen-Ion Concentration
  • Isoelectric Point
  • Kinetics
  • Manganese / pharmacology
  • Molecular Weight
  • Open Reading Frames
  • Recombinant Proteins / genetics
  • Recombinant Proteins / isolation & purification
  • Recombinant Proteins / metabolism
  • Sequence Analysis, DNA
  • Temperature

Substances

  • Coenzymes
  • DNA, Bacterial
  • Recombinant Proteins
  • Cobalt
  • Manganese
  • Arabinose
  • Aldose-Ketose Isomerases
  • L-arabinose isomerase