Molecular characterization of equine rotavirus in Ireland

J Clin Microbiol. 2008 Oct;46(10):3346-54. doi: 10.1128/JCM.00995-08. Epub 2008 Aug 20.

Abstract

Group A rotaviruses are important causative agents of severe, acute dehydrating diarrhea in foals. A total of 86 rotavirus-positive fecal samples, collected from diarrheic foals from 11 counties in three of the four provinces of Ireland, were obtained from the Irish Equine Centre in Kildare during a 7-year (1999 to 2005) passive surveillance study and were characterized molecularly to establish the VP7 (G type) and VP4 (P type) antigenic specificities. Fifty-eight samples (67.5%) were found to contain G3 viruses, while in 26 samples (30.2%) the rotaviruses were typed as G14 and in 2 samples (2.3%) there was a mixed infection, G3 plus G14. All samples except for two, which were untypeable, were characterized as P[12]. Fifty-eight percent of the samples were obtained from County Kildare, the center of the Irish horse industry, where an apparent shift from G3P[12] to G14P[12] was observed in 2003. By sequence analysis of the VP7 protein, the G3 Irish strains were shown to resemble viruses of the G3A subtype (H2-like) (97.1 to 100% amino acid [aa] identity), while the G14 Irish strains displayed 93.9 to 97.1% aa identity to other G14 viruses. In the VP8* fragment of the VP4 protein, the P[12] Irish viruses displayed high conservation (92.3 to 100% aa) with other equine P[12] viruses. Worldwide, G3P[12] and G14P[12] are the most prevalent equine rotavirus strains, and G3P[12] vaccines have been developed for prevention of rotavirus-associated diarrhea in foals. Investigations of the VP7/VP4 diversity of the circulating equine viruses and the dynamics of strain replacement are important for better assessing the efficacies of the vaccines.

MeSH terms

  • Animals
  • Antigens, Viral / genetics
  • Antigens, Viral / immunology
  • Capsid Proteins / genetics
  • Capsid Proteins / immunology
  • Feces / virology
  • Horse Diseases / virology*
  • Horses
  • Ireland / epidemiology
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Viral / genetics
  • Rotavirus / classification*
  • Rotavirus / genetics
  • Rotavirus / immunology
  • Rotavirus / isolation & purification*
  • Rotavirus Infections / veterinary*
  • Rotavirus Infections / virology
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Serotyping

Substances

  • Antigens, Viral
  • Capsid Proteins
  • RNA, Viral
  • VP4 protein, Rotavirus
  • VP7 protein, Rotavirus

Associated data

  • GENBANK/EU717533
  • GENBANK/EU717534
  • GENBANK/EU717535
  • GENBANK/EU717536
  • GENBANK/EU717537
  • GENBANK/EU717538
  • GENBANK/EU717539
  • GENBANK/EU717540
  • GENBANK/EU717541
  • GENBANK/EU717542
  • GENBANK/EU717543
  • GENBANK/EU717544