Crystal packing of the c(6)-type cytochrome OmcF from Geobacter sulfurreducens is mediated by an N-terminal Strep-tag II

Acta Crystallogr D Biol Crystallogr. 2008 Sep;64(Pt 9):919-26. doi: 10.1107/S0907444908021306. Epub 2008 Aug 13.

Abstract

The putative outer membrane c-type cytochrome OmcF from Geobacter sulfurreducens contains a single haem group and shows homology to soluble cytochromes c(6), a class of electron-transfer proteins that are typically found in cyanobacterial photosynthetic electron-transfer chains. OmcF was overexpressed heterologously in Escherichia coli as an N-terminal Strep-tag II fusion protein and isolated using streptactin-affinity chromatography followed by size-exclusion chromatography. The structure was solved by Fe SAD using data collected to a resolution of 1.86 A on a rotating copper-anode X-ray generator. In the crystal, packing interactions in one dimension were exclusively mediated through the Strep-tag II sequence. The tag and linker regions were in contact with three further monomers of OmcF, leading to a well defined electron-density map for this engineered and secondary-structure-free region of the molecule.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Affinity Labels / chemistry
  • Bacterial Outer Membrane Proteins / chemistry
  • Crystallization
  • Crystallography, X-Ray
  • Cytochromes c6 / chemistry*
  • Geobacter / chemistry*
  • Models, Molecular
  • Oligopeptides / chemistry
  • Recombinant Proteins / chemistry

Substances

  • Affinity Labels
  • Ala-Trp-Arg-His-Pro-Gln-Phe-Gly-Gly
  • Bacterial Outer Membrane Proteins
  • Cytochromes c6
  • Oligopeptides
  • Recombinant Proteins

Associated data

  • PDB/3D6I
  • PDB/R3D6ISF