Human mitochondrial RNA polymerase primes lagging-strand DNA synthesis in vitro

Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11122-7. doi: 10.1073/pnas.0805399105. Epub 2008 Aug 6.

Abstract

The mitochondrial transcription machinery synthesizes the RNA primers required for initiation of leading-strand DNA synthesis in mammalian mitochondria. RNA primers are also required for initiation of lagging-strand DNA synthesis, but the responsible enzyme has so far remained elusive. Here, we present a series of observations that suggests that mitochondrial RNA polymerase (POLRMT) can act as lagging-strand primase in mammalian cells. POLRMT is highly processive on double-stranded DNA, but synthesizes RNA primers with a length of 25 to 75 nt on a single-stranded template. The short RNA primers synthesized by POLRMT are used by the mitochondrial DNA polymerase gamma to initiate DNA synthesis in vitro. Addition of mitochondrial single-stranded DNA binding protein (mtSSB) reduces overall levels of primer synthesis, but stimulates primer-dependent DNA synthesis. Furthermore, when combined, POLRMT, DNA polymerase gamma, the DNA helicase TWINKLE, and mtSSB are capable of simultaneous leading- and lagging-strand DNA synthesis in vitro. Based on our observations, we suggest that POLRMT is the lagging-strand primase in mammalian mitochondria.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA Helicases / chemistry
  • DNA Helicases / metabolism
  • DNA Polymerase gamma
  • DNA Primase / chemistry
  • DNA Primase / metabolism*
  • DNA Replication / physiology*
  • DNA, Mitochondrial / biosynthesis*
  • DNA, Single-Stranded / chemistry
  • DNA, Single-Stranded / metabolism
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism
  • DNA-Directed DNA Polymerase / chemistry
  • DNA-Directed DNA Polymerase / metabolism*
  • DNA-Directed RNA Polymerases / chemistry
  • DNA-Directed RNA Polymerases / metabolism*
  • Genome, Mitochondrial / physiology
  • Humans
  • Mitochondrial Proteins / chemistry
  • Mitochondrial Proteins / metabolism*
  • RNA / biosynthesis*
  • RNA / chemistry

Substances

  • DNA, Mitochondrial
  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Mitochondrial Proteins
  • RNA primers
  • RNA
  • DNA Primase
  • DNA-Directed RNA Polymerases
  • POLRMT protein, human
  • DNA Polymerase gamma
  • DNA-Directed DNA Polymerase
  • DNA Helicases
  • TWNK protein, human