Pseudomonas xiamenensis sp. nov., a denitrifying bacterium isolated from activated sludge

Int J Syst Evol Microbiol. 2008 Aug;58(Pt 8):1911-5. doi: 10.1099/ijs.0.65459-0.

Abstract

A taxonomic study was carried out on strain C10-2T, a moderately halophilic denitrifier isolated from activated sludge samples collected in China. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain C10-2T belonged to the genus Pseudomonas, with highest sequence similarity of 98.1 and 97.7 % to 'Pseudomonas denitrificans' IAM 12023 and Pseudomonas pertucinogena JCM 11590T, respectively. The gyrB, rpoD and rpoB gene sequence similarity between strain C10-2T and P. pertucinogena JCM 11590T was respectively 84.1, 79.0 and 88.2 %. Phylogenetic trees based on these housekeeping genes showed that strain C10-2T and P. pertucinogena JCM 11590T form a clade at the periphery of the genus Pseudomonas. The DNA-DNA hybridization value between strain C10-2T and P. pertucinogena JCM 11590T was 30-32 %. The G+C content of the chromosomal DNA was 61.2 mol%. The combined genotypic and phenotypic data show that strain C10-2T represents a novel species of the genus Pseudomonas, for which the name Pseudomonas xiamenensis sp. nov. is proposed, with the type strain C10-2T (=CGMCC 1.6446 =JCM 13530T =MCCC 1A00089T).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Typing Techniques
  • Base Composition
  • China
  • DNA, Bacterial / analysis
  • DNA, Ribosomal / analysis
  • Genes, rRNA
  • Molecular Sequence Data
  • Nitrates / metabolism*
  • Nucleic Acid Hybridization
  • Phenotype
  • Phylogeny
  • Pseudomonas / classification*
  • Pseudomonas / genetics
  • Pseudomonas / isolation & purification
  • Pseudomonas / physiology
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sewage / microbiology*
  • Species Specificity

Substances

  • Bacterial Proteins
  • DNA, Bacterial
  • DNA, Ribosomal
  • Nitrates
  • RNA, Ribosomal, 16S
  • Sewage

Associated data

  • GENBANK/DQ088664
  • GENBANK/DQ350613
  • GENBANK/DQ650612
  • GENBANK/EF596883
  • GENBANK/EF596884
  • GENBANK/EF667149
  • GENBANK/EF673695