Structural modeling of glucanase-substrate complexes suggests a conserved tyrosine is involved in carbohydrate recognition in plant 1,3-1,4-beta-D-glucanases

J Comput Aided Mol Des. 2008 Dec;22(12):915-23. doi: 10.1007/s10822-008-9228-1. Epub 2008 Jul 29.

Abstract

Glycosyl hydrolase family 16 (GHF16) truncated Fibrobacter succinogenes (TFs) and GHF17 barley 1,3-1,4-beta-D-glucanases (beta-glucanases) possess different structural folds, beta-jellyroll and (beta/alpha)8, although they both catalyze the specific hydrolysis of beta-1,4 glycosidic bonds adjacent to beta-1,3 linkages in mixed beta-1,3 and beta-1,4 beta-D-glucans or lichenan. Differences in the active site region residues of TFs beta-glucanase and barley beta-glucanase create binding site topographies that require different substrate conformations. In contrast to barley beta-glucanase, TFs beta-glucanase possesses a unique and compact active site. The structural analysis results suggest that the tyrosine residue, which is conserved in all known 1,3-1,4-beta-D-glucanases, is involved in the recognition of mixed beta-1,3 and beta-1,4 linked polysaccharide.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Carbohydrate Metabolism*
  • Catalytic Domain
  • Endo-1,3(4)-beta-Glucanase / chemistry
  • Endo-1,3(4)-beta-Glucanase / metabolism*
  • Models, Molecular
  • Models, Structural*
  • Molecular Sequence Data
  • Plants / enzymology*
  • Sequence Homology, Amino Acid
  • Substrate Specificity
  • Tyrosine / chemistry
  • Tyrosine / metabolism*

Substances

  • Tyrosine
  • Endo-1,3(4)-beta-Glucanase