An investigation into the protonation states of the C1 domain of cardiac myosin-binding protein C

Acta Crystallogr D Biol Crystallogr. 2008 Jun;64(Pt 6):658-64. doi: 10.1107/S0907444908008792. Epub 2008 May 14.

Abstract

Myosin-binding protein C (MyBP-C) is a myofibril-associated protein found in cardiac and skeletal muscle. The cardiac isoform (cMyBP-C) is subject to reversible phosphorylation and the surface-charge state of the protein is of keen interest with regard to understanding the inter-protein interactions that are implicated in its function. Diffraction data from the C1 domain of cMyBP-C were extended to 1.30 A resolution, where the <I/sigma(I)> of the diffraction data crosses 2.0, using intense synchrotron radiation. The protonation-state determinations were not above 2sigma (the best was 1.81sigma) and therefore an extrapolation is given, based on 100% data completeness and the average DPI, that a 3sigma determination could be possible if X-ray data could be measured to 1.02 A resolution. This might be possible via improved crystallization or multiple sample evaluation, e.g. using robotics or a yet more intense/collimated X-ray beam or combinations thereof. An alternative would be neutron protein crystallography at 2 A resolution, where it is estimated that for the unit-cell volume of the cMyBP-C C1 domain crystal a crystal volume of 0.10 mm3 would be needed with fully deuterated protein on LADI III. These efforts would optimally be combined in a joint X-ray and neutron model refinement.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aspartic Acid / chemistry
  • Carrier Proteins / chemistry*
  • Carrier Proteins / genetics
  • Crystallography, X-Ray / methods
  • Crystallography, X-Ray / statistics & numerical data
  • Glutamic Acid / chemistry
  • Humans
  • Models, Molecular
  • Neutron Diffraction
  • Protein Structure, Tertiary
  • Protons
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Static Electricity
  • Synchrotrons

Substances

  • Carrier Proteins
  • Protons
  • Recombinant Proteins
  • myosin-binding protein C
  • Aspartic Acid
  • Glutamic Acid