Structural assignment of adenine aggregates in CDCl3

J Chem Phys. 2008 May 21;128(19):195103. doi: 10.1063/1.2912064.

Abstract

We reinvestigated the self-association of 9-substituted adenine derivatives in CDCl3 solutions and present the infrared spectra of 9-ethyladenine and N-methyl-9-ethyladenine and its aggregates in the spectral regions between 1500 and 1800 cm(-1) and between 2700 and 3600 cm(-1). Wavelength dependent absolute extinction coefficients of the monomer and dimers are presented on the basis of a simple deconvolution method. Comparison of the deconvoluted dimer spectra with quantum chemical calculations allows for a structural assignment of the two dimer structures that coexist in 9-ethyladenine/CDCl3 solutions. In contrast, the dimer spectrum of N-methyl-9-ethyladenine is dominated by a single isomer.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenine / analogs & derivatives
  • Adenine / chemistry*
  • Chemistry, Physical / methods*
  • Chloroform / chemistry*
  • Dimerization
  • Hydrogen Bonding
  • Models, Chemical
  • Molecular Conformation
  • Molecular Structure
  • Spectrophotometry, Infrared / methods*
  • Thermodynamics

Substances

  • 9-ethyladenine
  • Chloroform
  • Adenine