The linker-protein network: control of nucleosomal DNA accessibility

Trends Biochem Sci. 2008 Jun;33(6):247-53. doi: 10.1016/j.tibs.2008.04.001. Epub 2008 May 28.

Abstract

Numerous studies have recently addressed the accessibility of nucleosomal DNA to protein factors. Two popular concepts - the histone code and chromatin remodeling - consider the nucleosome as a passive entity that 'waits' to be marked by histone modifications and is 'mobilized' by ATP-dependent remodelers. Here, we propose a holistic view of the nucleosome as an active, dynamic entity, the accessibility of which is controlled by binding of different linker proteins to the DNA entry/exit site. The linker proteins might directly compete for this binding site; alternatively, protein chaperones and/or chromatin remodelers might exchange one linker protein for another. Finally, according to our proposed model, the exchange factors are themselves controlled by post-translational modifications or binding of protein partners, to respond to the ever-changing intra- and extra-cellular environment.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Animals
  • Chromatin Assembly and Disassembly / physiology*
  • DNA / metabolism*
  • Histones / metabolism*
  • Humans
  • Models, Biological*
  • Molecular Chaperones / metabolism
  • Nucleosomes / metabolism*
  • Protein Processing, Post-Translational / physiology*

Substances

  • Histones
  • Molecular Chaperones
  • Nucleosomes
  • DNA