A viral RNA competitively inhibits the antiviral endoribonuclease domain of RNase L

RNA. 2008 Jun;14(6):1026-36. doi: 10.1261/rna.958908. Epub 2008 Apr 21.

Abstract

Ribonuclease L (RNase L) is a latent endoribonuclease in an evolutionarily ancient interferon-regulated dsRNA-activated antiviral pathway. 2'-5' oligoadenylate (2-5A), the product of dsRNA-activated oligoadenylate synthetases (OASes), binds to ankyrin repeats near the amino terminus of RNase L, initiating a series of conformational changes that result in the activation of the endoribonuclease. A phylogenetically conserved RNA structure within group C enteroviruses inhibits the endoribonuclease activity of RNase L. In this study we report the mechanism by which group C enterovirus RNA inhibits RNase L. Viral RNA did not affect 2-5A binding to RNase L. Rather, the viral RNA inhibited the endoribonuclease domain. We used purified RNase L, purified 2-5A, and an RNA substrate with a 5' fluorophore and 3' quencher in FRET assays to measure inhibition of RNase L activity by the viral RNA. The group C enterovirus RNA was a competitive inhibitor of the endoribonuclease with a K(i) of 34 nM. Consistent with the kinetic profile of a competitive inhibitor, the viral RNA inhibited the constitutively active endoribonuclease domain of RNase L. We call this viral RNA the RNase L competitive inhibitor RNA (RNase L ciRNA).

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adenine Nucleotides / chemistry
  • Adenine Nucleotides / metabolism
  • Adenine Nucleotides / pharmacology
  • Base Sequence
  • Endoribonucleases / antagonists & inhibitors*
  • Endoribonucleases / metabolism
  • Enterovirus C, Human / genetics
  • Enterovirus C, Human / immunology
  • Enterovirus C, Human / metabolism*
  • Fluorescence Resonance Energy Transfer
  • Humans
  • Kinetics
  • Molecular Sequence Data
  • Mutation
  • Nucleic Acid Conformation
  • Oligoribonucleotides / chemistry
  • Oligoribonucleotides / metabolism
  • Oligoribonucleotides / pharmacology
  • Poliovirus / genetics
  • Protein Structure, Tertiary
  • RNA, Viral / genetics
  • RNA, Viral / metabolism*
  • RNA, Viral / pharmacology

Substances

  • Adenine Nucleotides
  • Oligoribonucleotides
  • RNA, Viral
  • 2',5'-oligoadenylate
  • Endoribonucleases
  • 2-5A-dependent ribonuclease