Direct observation of conformational folding coupled with disulphide rearrangement by using a water-soluble selenoxide reagent--a case of oxidative regeneration of ribonuclease A under weakly basic conditions

J Biochem. 2008 Jul;144(1):121-30. doi: 10.1093/jb/mvn049. Epub 2008 Apr 11.

Abstract

Oxidative regeneration pathways of bovine pancreatic ribonuclease A (RNase A), which has four SS linkages, were studied at 25 degrees C and pH 8.0 by using trans-3,4-dihydroxy-1-selenolane oxide (DHS(ox)), a new selenoxide reagent with strong oxidation power. The short-term folding study using a quench-flow instrument ( approximately 1 min) revealed that early intermediates (1S, 2S, 3S and 4S) are formed stochastically and irreversibly from the reduced protein (R) and do not have any stable structures. In the long-term folding study ( approximately 300 min), on the other hand, slow generation of the key intermediates (des[65-72] and des[40-95]) through SS rearrangement from the 3S intermediate ensemble was observed, followed by slight formation of native RNase A (N). The parallel UV and CD measurements demonstrated that formation of the key intermediates is accompanied with the formation of the native-like structures. Thus, DHS(ox) allowed facile identification of the conformational folding steps coupled with SS rearrangement on the major oxidative folding pathways.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromatography, High Pressure Liquid
  • Disulfides / chemistry*
  • Heterocyclic Compounds, 1-Ring / chemistry*
  • Hydrogen-Ion Concentration
  • Indicators and Reagents
  • Kinetics
  • Organoselenium Compounds / chemistry*
  • Oxidation-Reduction
  • Protein Conformation
  • Protein Folding
  • Ribonuclease, Pancreatic / chemistry*
  • Solubility
  • Water / chemistry

Substances

  • 3,4-dihydroxy-1-selenolane oxide
  • Disulfides
  • Heterocyclic Compounds, 1-Ring
  • Indicators and Reagents
  • Organoselenium Compounds
  • Water
  • Ribonuclease, Pancreatic