Development of chemically defined medium for Mannheimia succiniciproducens based on its genome sequence

Appl Microbiol Biotechnol. 2008 May;79(2):263-72. doi: 10.1007/s00253-008-1425-2.

Abstract

This study presents a novel methodology for the development of a chemically defined medium (CDM) using genome-scale metabolic network and flux balance analysis. The genome-based in silico analysis identified two amino acids and four vitamins as non-substitutable essential compounds to be supplemented to a minimal medium for the sustainable growth of Mannheimia succiniciproducens, while no substitutable essential compounds were identified. The in silico predictions were verified by cultivating the cells on a CDM containing the six non-substitutable essential compounds, and it was further demonstrated by observing no cell growth on the CDM lacking any one of the non-substitutable essentials. An optimal CDM for the enhancement of cell growth and succinic acid production, as a target product, was formulated with a single-addition technique. The fermentation on the optimal CDM increased the succinic acid productivity by 36%, the final succinic acid concentration by 17%, and the succinic acid yield on glucose by 15% compared to the cultivation using a complex medium. The optimal CDM also lowered the sum of the amounts of by-products (acetic, formic, and lactic acids) by 30%. The strategy reported in this paper should be generally applicable to the development of CDMs for other organisms, whose genome sequences are available.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Culture Media / chemical synthesis
  • Culture Media / chemistry*
  • Fermentation
  • Genetic Engineering / methods
  • Genome, Bacterial
  • Mannheimia / genetics
  • Mannheimia / growth & development
  • Mannheimia / metabolism*
  • Metabolic Networks and Pathways / genetics*
  • Succinic Acid / metabolism*

Substances

  • Culture Media
  • Succinic Acid