Full genomic analysis of human rotavirus strain TB-Chen isolated in China

Virology. 2008 Jun 5;375(2):361-73. doi: 10.1016/j.virol.2008.01.003. Epub 2008 Mar 7.

Abstract

A G2P[4]/NSP4[A] rotavirus strain TB-Chen was isolated from a 2-year-old patient hospitalized with acute gastroenteritis in Kunming, China. The strain TB-Chen was demonstrated having group A-specific antigenicity, a "short" (subgroup II) electropherotype. To investigate its overall genomic relatedness and to determine which group it belonged, the complete genome of strain TB-Chen was determined. Genomic comparison based on amino acid sequence identity and phylogenetic analysis revealed that all 11 gene segments of strain TB-Chen were highly identical (>91.80%) with the representative G2P[4]/NSP4[A] human strains DS-1, S2, NR1 and IS2, suggesting that this rotavirus strain was derived from human host. Besides, almost all the available representative rotavirus gene segments among group A were analyzed and identified within 15 G-types, 28 P-types, and 6 NSP4 genotypes. This is the first report of group A rotavirus genomic analyses in China and the findings have important implications for rotavirus vaccine development.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Child, Preschool
  • China / epidemiology
  • Disease Outbreaks*
  • Genome, Viral
  • Humans
  • Molecular Sequence Data
  • Phylogeny
  • Rotavirus / classification
  • Rotavirus / genetics*
  • Rotavirus / isolation & purification
  • Rotavirus Infections / epidemiology*
  • Rotavirus Infections / virology

Associated data

  • GENBANK/AY787644
  • GENBANK/AY787645
  • GENBANK/AY787646
  • GENBANK/AY787647
  • GENBANK/AY787648
  • GENBANK/AY787649
  • GENBANK/AY787650
  • GENBANK/AY787651
  • GENBANK/AY787652
  • GENBANK/AY787653
  • GENBANK/AY787654