Polynitroaromatic explosives such as 2,4,6-trinitrophenol (picric acid) and 2,4,6-trinitrotoluene (TNT) are toxic and recalcitrant environmental pollutants. They persist in the environment due to the highly inactivated pi system of their aromatic rings, which are inaccessible to dioxygenases that normally initiate the bacterial aerobic catabolism of (nitro-) aromatic compounds. Aside from reductive transformation of nitro side groups to hydroxylamines, trinitroarenes are prone to aromatic ring reductions by some flavin reductases to yield Meisenheimer mono and dihydride complexes. Here we show that the simultaneous accumulation of Meisenheimer complexes and aromatic hydroxylamines derived from TNT gives rise to the condensation of both types of reactive intermediates to secondary diarylamines and nitrite as the end-products of this environmentally relevant reaction sequence. As a consequence, overall mass balances of aerobic biotransformations of TNT become possible for the first time. In our study, the process of TNT activation was enzymatically initiated by the xenobiotic reductase B (XenB)-like flavin reductase of Pseudomonas putida JLR11 and then completed chemically by autodimerization. The structures of the formed end products were unequivocally elucidated by NMR.