Target-assembled exciplexes based on Scorpion oligonucleotides

Biosci Rep. 2008 Feb;28(1):1-5. doi: 10.1042/BSR20070006.

Abstract

Scorpion probes, specific DNA probe sequences maintained in a hairpin-loop, can be modified to carry the components of an exciplex for use as a novel fluorescence-based method for specific detection of DNA. The exciplex partners (5'-pyrenyl and 3'-naphthalenyl) were attached to oligonucleotides via phosphoramidate links to terminal phosphate groups. Hybridization of the probe to a complementary target in a buffer containing trifluoroethanol produced an obvious fluorescence change from blue (pyrene locally excited state emission) to green (exciplex emission).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA Probes / metabolism*
  • Fluorescent Dyes
  • Nucleic Acid Hybridization
  • Oligonucleotide Probes / metabolism*
  • Polymerase Chain Reaction / methods
  • Spectrometry, Fluorescence

Substances

  • DNA Probes
  • Fluorescent Dyes
  • Oligonucleotide Probes