Relative and absolute configuration of antitumor agent SW-163D

Biosci Biotechnol Biochem. 2007 Dec;71(12):2969-76. doi: 10.1271/bbb.70371. Epub 2007 Dec 7.

Abstract

Our interest on engineering non-ribosomal synthetase responsible for SW-163 biosynthesis prompted us to determine the relative and absolute configuration of antitumor cyclic depsipeptide SW-163s. We first isolated and identified SW-163 homologs D, F and G as known compounds UK-63598, UK-65662 and UK-63052, respectively. Both enantiomers of the unusual constitutive amino acid, N-methylnorcoromic acid, were synthesized in chiral forms starting from (R)- and (S)-1,2-propanediol. The hydrolyzate of SW-163D, a major constituent of this family, was converted with Marfey's reagent, 1-fluoro-2,4-dinitrophenyl-5-L-alanine-amide (L-FDAA), and the resulting mixture of amino acid derivatives was subjected to an LC/MS analysis. Compared with authentic samples, the analytical data unambiguously show that SW-163D consisted of L-Ala, D-Ser and (1S, 2S)-N-methylnorcoronamic acid. The remaining stereochemistry of the N-methylcysteine moieties was determined from NOE data.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alkaloids / chemistry
  • Amino Acids / chemistry
  • Antineoplastic Agents / chemical synthesis
  • Antineoplastic Agents / chemistry*
  • Chromatography, High Pressure Liquid
  • Cyclopropanes / chemistry
  • Depsipeptides / chemical synthesis
  • Depsipeptides / chemistry*
  • Echinomycin / analogs & derivatives*
  • Echinomycin / chemical synthesis
  • Echinomycin / chemistry
  • Leucine / analogs & derivatives
  • Leucine / chemistry
  • Mass Spectrometry
  • Molecular Conformation
  • Nitro Compounds / chemistry
  • Propylene Glycol / chemistry
  • Quinolizines / chemistry
  • Stereoisomerism

Substances

  • 1-fluoro-2,4-dinitrophenyl-5-leucinamide
  • Alkaloids
  • Amino Acids
  • Antineoplastic Agents
  • Cyclopropanes
  • Depsipeptides
  • N-methylnorcoronamic acid
  • Nitro Compounds
  • Quinolizines
  • UK 63052
  • UK 63598
  • UK 65662
  • Echinomycin
  • Propylene Glycol
  • Leucine
  • N-methylcytisine