Probing the conformation of human tRNA(3)(Lys) in solution by NMR

FEBS Lett. 2007 Nov 13;581(27):5307-14. doi: 10.1016/j.febslet.2007.10.026. Epub 2007 Oct 24.

Abstract

Human tRNA(3)(Lys) acts as a primer for the reverse transcription of human immunodeficiency virus genomic RNA. To form an initiation complex with genomic RNA, tRNA(3)(Lys) must reorganize its secondary structure. To provide a starting point for mechanistic studies of the formation of the initiation complex, we here present solution NMR investigations of human tRNA(3)(Lys). We use a straightforward set of NMR experiments to show that tRNA(3)(Lys) adopts a standard transfer ribonucleic acid tertiary structure in solution, and that Mg(2+) is required for this folding. The results underscore the power of NMR to reveal rapidly the conformation of RNAs.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Base Sequence
  • Humans
  • Magnesium / metabolism
  • Models, Molecular
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Nucleic Acid Conformation*
  • RNA, Transfer, Amino Acyl / chemistry*
  • RNA, Transfer, Amino Acyl / metabolism
  • Solutions

Substances

  • RNA, Transfer, Amino Acyl
  • Solutions
  • Magnesium