Rapid measurement of 3J(H N-H alpha) and 3J(N-H beta) coupling constants in polypeptides

J Biomol NMR. 2007 Dec;39(4):259-63. doi: 10.1007/s10858-007-9200-8. Epub 2007 Oct 4.

Abstract

We present two NMR experiments, (3,2)D HNHA and (3,2)D HNHB, for rapid and accurate measurement of 3J(H N-H alpha) and 3J(N-H beta) coupling constants in polypeptides based on the principle of G-matrix Fourier transform NMR spectroscopy and quantitative J-correlation. These experiments, which facilitate fast acquisition of three-dimensional data with high spectral/digital resolution and chemical shift dispersion, will provide renewed opportunities to utilize them for sequence specific resonance assignments, estimation/characterization of secondary structure with/without prior knowledge of resonance assignments, stereospecific assignment of prochiral groups and 3D structure determination, refinement and validation. Taken together, these experiments have a wide range of applications from structural genomics projects to studying structure and folding in polypeptides.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Hydrogen / chemistry
  • Hydrogen Bonding
  • Nitrogen / chemistry
  • Nuclear Magnetic Resonance, Biomolecular*
  • Peptides / chemistry*
  • Protein Folding

Substances

  • Peptides
  • Hydrogen
  • Nitrogen