A quantitative kinetic scheme for 70 S translation initiation complex formation

J Mol Biol. 2007 Oct 26;373(3):562-72. doi: 10.1016/j.jmb.2007.07.032. Epub 2007 Aug 2.

Abstract

Association of the 30 S initiation complex (30SIC) and the 50 S ribosomal subunit, leading to formation of the 70 S initiation complex (70SIC), is a critical step of the translation initiation pathway. The 70SIC contains initiator tRNA, fMet-tRNA(fMet), bound in the P (peptidyl)-site in response to the AUG start codon. We have formulated a quantitative kinetic scheme for the formation of an active 70SIC from 30SIC and 50 S subunits on the basis of parallel rapid kinetics measurements of GTP hydrolysis, Pi release, light-scattering, and changes in fluorescence intensities of fluorophore-labeled IF2 and fMet-tRNA(f)(Met). According to this scheme, an initially formed labile 70 S complex, which promotes rapid IF2-dependent GTP hydrolysis, either dissociates reversibly into 30 S and 50 S subunits or is converted to a more stable form, leading to 70SIC formation. The latter process takes place with intervening conformational changes of ribosome-bound IF2 and fMet-tRNA(fMet), which are monitored by spectral changes of fluorescent derivatives of IF2 and fMet-tRNA(fMet). The availability of such a scheme provides a useful framework for precisely elucidating the mechanisms by which substituting the non-hydrolyzable analog GDPCP for GTP or adding thiostrepton inhibit formation of a productive 70SIC. GDPCP does not affect stable 70 S formation, but perturbs fMet-tRNA(fMet) positioning in the P-site. In contrast, thiostrepton severely retards stable 70 S formation, but allows normal binding of fMet-tRNA(fMet)(prf20) to the P-site.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Eukaryotic Initiation Factor-2 / metabolism
  • GTP Phosphohydrolases / metabolism
  • Kinetics
  • Peptide Chain Initiation, Translational*
  • Prokaryotic Initiation Factor-2 / metabolism
  • Prokaryotic Initiation Factor-3 / metabolism*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • RNA, Transfer, Amino Acyl / metabolism
  • RNA, Transfer, Met*
  • Ribosomes / metabolism*

Substances

  • Eukaryotic Initiation Factor-2
  • Prokaryotic Initiation Factor-2
  • Prokaryotic Initiation Factor-3
  • RNA, Messenger
  • RNA, Transfer, Amino Acyl
  • RNA, Transfer, Met
  • eIF-2 Met-tRNA(f)(met) GDPCP
  • GTP Phosphohydrolases