Pedobacter koreensis sp. nov., isolated from fresh water

Int J Syst Evol Microbiol. 2007 Sep;57(Pt 9):2079-2083. doi: 10.1099/ijs.0.65186-0.

Abstract

A motile, rod-shaped bacterium, designated strain WPCB189(T), was isolated from fresh water collected from the Woopo wetland (Republic of Korea). The cells were found to be Gram-negative, aerobic and catalase- and oxidase-positive. A phylogenetic analysis based on 16S rRNA gene sequences showed that this isolate forms a lineage within the genus Pedobacter, showing sequence similarities of 89.7-96.4 % with respect to recognized species of the genus, and represents a novel member of this genus. The major fatty acids were iso-C(15 : 0) 2-OH and/or C(16 : 1)omega7c (summed feature 3, 29.7 %), iso-C(15 : 0) (26.4 %) and iso-C(17 : 1) 3-OH (10.1 %). The DNA G+C content was 38.0 mol%. On the basis of data obtained from this polyphasic taxonomic study, strain WPCB189(T) represents a novel species of the genus Pedobacter, for which the name Pedobacter koreensis sp. nov. is proposed. The type strain is WPCB189(T) (=KCTC 12536(T)=NBRC 101153(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aerobiosis / physiology
  • Bacterial Typing Techniques
  • Bacteroidetes / classification*
  • Bacteroidetes / genetics
  • Bacteroidetes / isolation & purification*
  • Bacteroidetes / physiology
  • Base Composition
  • Carbohydrate Metabolism
  • Catalase / biosynthesis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Fresh Water / microbiology*
  • Genes, rRNA
  • Korea
  • Locomotion / physiology
  • Molecular Sequence Data
  • Oxidoreductases / biosynthesis
  • Phylogeny
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Oxidoreductases
  • Catalase

Associated data

  • GENBANK/DQ092871