Induction of parallel human telomeric G-quadruplex structures by Sr(2+)

Biochem Biophys Res Commun. 2007 Jun 22;358(1):298-303. doi: 10.1016/j.bbrc.2007.04.126. Epub 2007 Apr 27.

Abstract

Human telomeric DNA forms G-quadruplex secondary structures, which can inhibit telomerase activity and are targets for anti-cancer drugs. Here we show that Sr(2+) can induce human telomeric DNA to form both inter- and intramolecular structures having characteristics consistent with G-quadruplexes. Unlike Na(+) or K(+), Sr(2+) facilitated intermolecular structure formation for oligonucleotides with 2 to 5 5'-d(TTAGGG)-3' repeats. Longer 5'-d(TTAGGG)-3' oligonucleotides formed exclusively intramolecular structures. Altering the 5'-d(TTAGGG)-3' to 5'-d(TTAGAG)-3' in the 1st, 3rd, or 4th repeats of 5'-d(TTAGGG)(4)-3' stabilized the formation of intermolecular structures. However, a more compact, intramolecular structure was still observed when the 2nd repeat was altered. Circular dichroism spectroscopy results suggest that the structures were parallel-stranded, distinguishing them from similar DNA sequences in Na(+) and K(+). This study shows that Sr(2+), promotes parallel-stranded, inter- and intramolecular G-quadruplexes that can serve as models to study DNA substrate recognition by telomerase.

MeSH terms

  • Cations, Divalent
  • Circular Dichroism
  • DNA / chemistry*
  • Electrophoresis, Polyacrylamide Gel
  • Guanine / chemistry
  • Humans
  • Nucleic Acid Conformation*
  • Oligonucleotides / chemistry*
  • Potassium / chemistry
  • Sodium / chemistry
  • Strontium / chemistry*
  • Telomere / chemistry*

Substances

  • Cations, Divalent
  • Oligonucleotides
  • Guanine
  • DNA
  • Sodium
  • Potassium
  • Strontium