Raman-assisted crystallography reveals end-on peroxide intermediates in a nonheme iron enzyme

Science. 2007 Apr 20;316(5823):449-53. doi: 10.1126/science.1138885.

Abstract

Iron-peroxide intermediates are central in the reaction cycle of many iron-containing biomolecules. We trapped iron(III)-(hydro)peroxo species in crystals of superoxide reductase (SOR), a nonheme mononuclear iron enzyme that scavenges superoxide radicals. X-ray diffraction data at 1.95 angstrom resolution and Raman spectra recorded in crystallo revealed iron-(hydro)peroxo intermediates with the (hydro)peroxo group bound end-on. The dynamic SOR active site promotes the formation of transient hydrogen bond networks, which presumably assist the cleavage of the iron-oxygen bond in order to release the reaction product, hydrogen peroxide.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallization
  • Crystallography, X-Ray
  • Deltaproteobacteria / enzymology*
  • Ferric Compounds / chemistry
  • Ferric Compounds / metabolism
  • Hydrogen Bonding
  • Hydrogen Peroxide / chemistry*
  • Hydrogen Peroxide / metabolism
  • Iron / chemistry*
  • Ligands
  • Models, Chemical
  • Models, Molecular
  • Oxidation-Reduction
  • Oxidoreductases / chemistry*
  • Oxidoreductases / metabolism*
  • Oxygen / chemistry
  • Peroxides / chemistry*
  • Protein Conformation
  • Protons
  • Spectrum Analysis, Raman

Substances

  • Ferric Compounds
  • Ligands
  • Peroxides
  • Protons
  • Hydrogen Peroxide
  • Iron
  • Oxidoreductases
  • superoxide reductase
  • Oxygen

Associated data

  • PDB/2JI1
  • PDB/2JI2
  • PDB/2JI3