Mass spectrometry reveals the missing links in the assembly pathway of the bacterial 20 S proteasome

J Biol Chem. 2007 Jun 22;282(25):18448-18457. doi: 10.1074/jbc.M701534200. Epub 2007 Apr 12.

Abstract

The 20 S proteasome is an essential proteolytic particle, responsible for degrading short-lived and abnormal intracellular proteins. The 700-kDa assembly is comprised of 14 alpha-type and 14 beta-type subunits, which form a cylindrical architecture composed of four stacked heptameric rings (alpha7beta7beta7alpha7). The formation of the 20 S proteasome is a complex process that involves a cascade of folding, assembly, and processing events. To date, the understanding of the assembly pathway is incomplete due to the experimental challenges of capturing short-lived intermediates. In this study, we have applied a real-time mass spectrometry approach to capture transient species along the assembly pathway of the 20 S proteasome from Rhodococcus erythropolis. In the course of assembly, we observed formation of an early alpha/beta-heterodimer as well as an unprocessed half-proteasome particle. Formation of mature holoproteasomes occurred in concert with the disappearance of half-proteasomes. We also analyzed the beta-subunits before and during assembly and reveal that those with longer propeptides are incorporated into half- and full proteasomes more rapidly than those that are heavily truncated. To characterize the preholoproteasome, formed by docking of two unprocessed half-proteasomes and not observed during assembly of wild type subunits, we trapped this intermediate using a beta-subunit mutational variant. In summary, this study provides evidence for transient intermediates in the assembly pathway and reveals detailed insight into the cleavage sites of the propeptide.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Dimerization
  • Electrophoresis, Polyacrylamide Gel
  • Macromolecular Substances
  • Mass Spectrometry / methods
  • Models, Molecular
  • Molecular Conformation
  • Molecular Sequence Data
  • Mutagenesis
  • Peptides / chemistry
  • Proteasome Endopeptidase Complex / chemistry*
  • Proteasome Endopeptidase Complex / metabolism
  • Protein Conformation
  • Protein Structure, Tertiary
  • Rhodococcus / chemistry
  • Rhodococcus / metabolism*
  • Spectrometry, Mass, Electrospray Ionization

Substances

  • Macromolecular Substances
  • Peptides
  • Proteasome Endopeptidase Complex