Molecular epidemiological analysis of Newcastle disease virus isolated in China in 2005

J Virol Methods. 2007 Mar;140(1-2):206-11. doi: 10.1016/j.jviromet.2006.10.012. Epub 2006 Nov 28.

Abstract

Eighty-three strains of Newcastle disease virus (NDV) were obtained from outbreaks in chickens, pigeons, geese, and ducks in China in 2005 and characterized genotypically. The main functional region of the F gene (535 nucleotides) was amplified and sequenced. A phylogenetic tree based on nucleotides 47-435 of the F gene was created using sequences from 83 isolates and representative NDV sequences obtained from GenBank. Phylogenetic analysis showed that all newly characterized strains belonged to six genetic groups: I, II, III, VIb, VIIc, and VIId. All the isolates belonging to groups I and II (14 total) were lentogenic according to the amino acid sequences of the fusion protein cleavage site, and either V4 or LaSota-type, depending on the vaccines that were used. Most isolates (64 total) were classified in group VIId, a predominant genotype responsible for most Newcastle disease outbreaks since the end of the last century. One strain, NDV05-055, was in group VIIc, three pigeon strains were in group VIb, and one isolate, NDV05-041, was in group III, and characterized as a velogenic strain. This study revealed that genotype VIId was the major NDV strain responsible for the 2005 ND epizoonosis that occurred in China.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Chickens / virology
  • China / epidemiology
  • Columbidae / virology
  • Ducks / virology
  • Geese / virology
  • Molecular Epidemiology*
  • Newcastle Disease / epidemiology
  • Newcastle Disease / virology*
  • Newcastle disease virus / genetics
  • Newcastle disease virus / isolation & purification*
  • Newcastle disease virus / pathogenicity
  • Phylogeny
  • Poultry Diseases / epidemiology
  • Poultry Diseases / genetics
  • Poultry Diseases / virology*
  • RNA, Viral / genetics
  • RNA, Viral / isolation & purification
  • Reverse Transcriptase Polymerase Chain Reaction
  • Viral Fusion Proteins / genetics*

Substances

  • RNA, Viral
  • Viral Fusion Proteins