FRET templated by G-quadruplex DNA: a specific ternary interaction using an original pair of donor/acceptor partners

J Am Chem Soc. 2006 Sep 13;128(36):11890-3. doi: 10.1021/ja062193h.

Abstract

G-quadruplex represents a suitable scaffold for FRET (fluorescence resonance energy transfer) since its two external quartets offer two well-defined binding sites for concomitant trapping of donor/acceptor partners. Combining selective G-quadruplex binders (macrocyclic bis(quinacridine) BOQ(1) or monomeric quinacridine MMQ(1), donor) with a highly fluorescent DNA probe (thiazole orange, acceptor), we designed a structure-specific FRET-system based on an unprecedented noncovalent ternary complex. This system could be potentially usable as a signature for quadruplex-DNA conformation in solution, but also might offer a unique means for observing cation and ligand binding influence on quadruplex topology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acridines / chemistry*
  • Benzothiazoles / chemistry*
  • Binding Sites
  • DNA / chemistry*
  • DNA Probes / chemistry
  • Fluorescence Resonance Energy Transfer / methods
  • Fluorescent Dyes / chemistry*
  • G-Quadruplexes
  • Nucleic Acid Conformation
  • Quinolines / chemistry*
  • Spectrometry, Fluorescence

Substances

  • Acridines
  • Benzothiazoles
  • DNA Probes
  • Fluorescent Dyes
  • Quinolines
  • thiazole orange
  • DNA