arrayQCplot: software for checking the quality of microarray data

Bioinformatics. 2006 Sep 15;22(18):2305-7. doi: 10.1093/bioinformatics/btl367. Epub 2006 Jul 24.

Abstract

arrayQCplot is a software for the exploratory analysis of microarray data. This software focuses on quality control and generates newly developed plots for quality and reproducibility checks. It is developed using R and provides a user-friendly graphical interface for graphics and statistical analysis. Therefore, novice users will find arrayQCplot as an easy-to-use software for checking the quality of their data by a simple mouse click.

Availability: arrayQCplot software is available from Bioconductor at http://www.bioconductor.org. A more detailed manual is available at http://bibs.snu.ac.kr/software/arrayQCplot

Contact: tspark@stats.snu.ac.kr.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms*
  • Computer Graphics
  • Data Interpretation, Statistical*
  • Oligonucleotide Array Sequence Analysis / methods*
  • Quality Control
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Software*
  • User-Computer Interface*