Introns regulate RNA and protein abundance in yeast

Genetics. 2006 Sep;174(1):511-8. doi: 10.1534/genetics.106.058560. Epub 2006 Jul 2.

Abstract

The purpose of introns in the architecturally simple genome of Saccharomyces cerevisiae is not well understood. To assay the functional relevance of introns, a series of computational analyses and several detailed deletion studies were completed on the intronic genes of S. cerevisiae. Mining existing data from genomewide studies on yeast revealed that intron-containing genes produce more RNA and more protein and are more likely to be haplo-insufficient than nonintronic genes. These observations for all intronic genes held true for distinct subsets of genes including ribosomal, nonribosomal, duplicated, and nonduplicated. Corroborating the result of computational analyses, deletion of introns from three essential genes decreased cellular RNA levels and caused measurable growth defects. These data provide evidence that introns improve transcriptional and translational yield and are required for competitive growth of yeast.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Actins / genetics
  • Fungal Proteins / metabolism*
  • Gene Deletion
  • Gene Duplication
  • Gene Expression
  • Gene Expression Regulation, Fungal
  • Genes, Fungal
  • Genome, Fungal
  • Introns / physiology*
  • Microbial Sensitivity Tests
  • Mutation
  • Phenotype
  • Phosphoprotein Phosphatases / genetics
  • Protein Phosphatase 1
  • RNA Splicing / physiology
  • RNA, Fungal / metabolism*
  • RNA, Ribosomal / genetics
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / growth & development
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism
  • Yeasts / genetics*
  • Yeasts / growth & development

Substances

  • Act1 protein, S cerevisiae
  • Actins
  • Fungal Proteins
  • RNA, Fungal
  • RNA, Ribosomal
  • Saccharomyces cerevisiae Proteins
  • GLC7 protein, S cerevisiae
  • Phosphoprotein Phosphatases
  • Protein Phosphatase 1