A blue-green absorbing cross-linker for rapid photoswitching of peptide helix content

Bioconjug Chem. 2006 May-Jun;17(3):670-6. doi: 10.1021/bc050363u.

Abstract

Azobenzene derivatives can be used to reversibly photoregulate secondary structure when introduced as intramolecular bridges in peptides and proteins. Here we report the design, synthesis, and characterization of a disubstituted N,N-dialkyl azobenzene derivative that absorbs near 480 nm in aqueous solution and relaxes with a half-life of approximately 50 ms at room temperature. The wavelength of maximum absorbance and the rate of thermal relaxation are solvent-dependent. An increase in the percentage of organic solvent leads, in general, to a blue shift in the absorbance maximum and a slowing of the relaxation rate. In accordance with the design, the thermal relaxation of the azobenzene cross-linker from cis to trans causes an increase in the helix content of one peptide where the linker is attached via cysteine residues spaced at i, i + 11 positions and a decrease in helix content of another peptide with cysteine residues spaced at i, i + 7. This cross-linker design thus expands the possibilities for fast photocontrol of peptide and protein structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Color
  • Cross-Linking Reagents / chemical synthesis
  • Cross-Linking Reagents / chemistry*
  • Hydrogen-Ion Concentration
  • Isomerism
  • Kinetics
  • Molecular Sequence Data
  • Peptides / chemistry*
  • Photochemistry
  • Protein Structure, Secondary
  • Solvents
  • Spectrum Analysis
  • Time Factors

Substances

  • Cross-Linking Reagents
  • Peptides
  • Solvents