2D QSAR of PPARgamma agonist binding and transactivation

Bioorg Med Chem. 2006 Aug 1;14(15):5178-95. doi: 10.1016/j.bmc.2006.04.005. Epub 2006 May 2.

Abstract

Multilinear QSAR models are developed for the largest and most diverse set of PPARgamma agonists treated hitherto. Binding of these small molecules to the human nuclear receptor PPARgamma is described by models that are built on simple 2D molecular descriptors and nevertheless are of good quality and predictive power (e.g., 144 compounds, 10 descriptors, r2=0.79, r2(cv)=0.76). The models presented are thoroughly validated by crossvalidation, randomization experiments, bootstrapping, and training set/test set partitioning. They may therefore be helpful in the design of new antidiabetic drug candidates. For gene transactivation, the functional activity of the agonists, a corresponding model for a similarly diverse compound set is of somewhat lower statistical quality.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Computer Simulation
  • Drug Design
  • Fatty Acids / chemistry
  • Fatty Acids / pharmacology
  • Humans
  • Indoles / chemistry
  • Indoles / pharmacology
  • Ligands
  • Molecular Structure
  • PPAR gamma / agonists*
  • PPAR gamma / chemistry
  • PPAR gamma / genetics*
  • Quantitative Structure-Activity Relationship*
  • Thiazolidinediones / chemistry
  • Thiazolidinediones / pharmacology
  • Transcriptional Activation / drug effects
  • Tyrosine / analogs & derivatives
  • Tyrosine / chemistry
  • Tyrosine / pharmacology

Substances

  • Fatty Acids
  • Indoles
  • Ligands
  • PPAR gamma
  • Thiazolidinediones
  • Tyrosine