Identification and expression of novel isoforms of human stromal cell-derived factor 1

Gene. 2006 Jun 7:374:174-9. doi: 10.1016/j.gene.2006.02.001. Epub 2006 Apr 19.

Abstract

Stromal Cell-derived factor 1 (SDF-1) is a CXC chemokine that binds to the CXCR4 receptor. Recent publication indicates that the SDF-1/CXCR4 signaling pathway plays a pivotal role during development and in many patho-physiological conditions including hematopoiesis, blood vessel formation, cancer metastasis, angiogenesis and HIV infection. Two human SDF-1 isoforms, SDF-1alpha and SDF-1beta, have been reported to date. Here we report the identification of four additional human SDF-1 isoforms derived from alternative splicing events, SDF-1gamma, SDF-1delta, SDF-1epsilon and SDF-1phi. These SDF-1 splice variants all share the same first three exons but contain different fourth exons. The human SDF-1 gene spans over 88 kilobase-pairs on chromosome 10. Using the semi-quantitative RT-PCR method, we determined the tissue distribution of these SDF-1 isoforms. SDF-1alpha and SDF-1beta share similar expression patterns and the highest expression were detected in liver, pancreas and spleen. SDF-1gamma seems to be the human orthologue of recently isolated rat SDF-1gamma, and its expression was only detected in the heart. SDF-1delta expression can be detected in several adult tissues but the highest expression was detected in fetal liver. When transfected into HEK293 cells, all the SDF-1 isoforms can be detected as secreted proteins in the cell culture media. The conditioned media from transfected cells can stimulate cell migration in a CXCR4-dependent manner. These data suggest that the novel SDF-1 splice variants encode functional proteins.

MeSH terms

  • Alternative Splicing
  • Amino Acid Sequence
  • Base Pairing
  • Benzylamines
  • Cell Line
  • Cell Movement / drug effects
  • Chemokine CXCL12
  • Chemokines, CXC / genetics
  • Chemokines, CXC / metabolism*
  • Chemokines, CXC / pharmacology
  • Chromosomes, Human, Pair 10
  • Culture Media / analysis
  • Culture Media / chemistry
  • Culture Media, Conditioned / pharmacology
  • Cyclams
  • Dose-Response Relationship, Drug
  • Exons
  • Gene Expression / physiology*
  • Genetic Variation
  • Heterocyclic Compounds / pharmacology
  • Humans
  • Molecular Sequence Data
  • Protein Isoforms / classification
  • Protein Isoforms / genetics
  • Protein Isoforms / metabolism
  • RNA, Messenger / genetics
  • Sequence Homology, Amino Acid
  • Tissue Distribution

Substances

  • Benzylamines
  • CXCL12 protein, human
  • Chemokine CXCL12
  • Chemokines, CXC
  • Culture Media
  • Culture Media, Conditioned
  • Cyclams
  • Heterocyclic Compounds
  • Protein Isoforms
  • RNA, Messenger
  • plerixafor