Retrovirus translation initiation: Issues and hypotheses derived from study of HIV-1

Curr HIV Res. 2006 Apr;4(2):131-9. doi: 10.2174/157016206776055039.

Abstract

Human immunodeficiency virus type 1 (HIV-1) has a small, multifunctional genome that encodes a relatively large and complex proteome. The virus has adopted specialized post-transcriptional control mechanisms to maximize its coding capacity while economically maintaining the information stored in cis-acting replication sequences. The conserved features of the 5' untranslated region of all viral transcripts suggest they are poor substrates for cap-dependent ribosome scanning and provide a compelling rationale for internal initiation of translation. This article summarizes key experimental results of studies that have evaluated HIV-1 translation initiation. A model is discussed in which cap-dependent and cap-independent initiation mechanisms of HIV-1 co-exist to ensure viral protein production in the context of 1) structured replication motifs that inhibit ribosome scanning, and 2) alterations in host translation machinery in response to HIV-1 infection or other cellular stresses. We discuss key issues that remain to be understood and suggest parameters to validate internal initiation activity in HIV-1 and other retroviruses.

Publication types

  • Research Support, N.I.H., Extramural
  • Review

MeSH terms

  • HIV-1 / genetics*
  • HIV-1 / metabolism
  • HIV-1 / physiology
  • Humans
  • Peptide Chain Initiation, Translational / physiology*
  • Protein Biosynthesis / genetics*
  • RNA, Messenger / genetics
  • RNA, Messenger / physiology
  • RNA, Viral / genetics*
  • RNA, Viral / metabolism
  • Virus Replication / genetics

Substances

  • RNA, Messenger
  • RNA, Viral