A triplet mechanism for the formation of cyclobutane pyrimidine dimers in UV-irradiated DNA

J Phys Chem B. 2006 Apr 13;110(14):7556-62. doi: 10.1021/jp060196a.

Abstract

The reaction pathways for the photochemical formation of cyclobutane thymine dimers in DNA are explored using hybrid density functional theory techniques. It is concluded that the thymine-thymine [2 + 2] cycloaddition displays favorable energy barriers and reaction energies in both the triplet and the singlet excited states. The stepwise cycloaddition in the triplet excited state involves the initial formation of a diradical followed by ring closure via singlet-triplet interaction. The triplet mechanism is thus completely different from the concerted singlet state cycloaddition processes. The key geometric features and electron spin densities are also discussed. Bulk solvation has a major effect by reducing the barriers and increasing the diradical stabilities. The present results provide a rationale for the faster cycloreaction observed in the singlet excited states than in the triplet excited states.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computer Simulation
  • Cyclization
  • Cyclobutanes / chemistry*
  • DNA / chemistry*
  • DNA / radiation effects*
  • Hydrogen Bonding
  • Models, Molecular
  • Pyrimidines / chemistry*
  • Solvents
  • Thymine / chemistry
  • Ultraviolet Rays

Substances

  • Cyclobutanes
  • Pyrimidines
  • Solvents
  • DNA
  • Thymine