Structural studies on 2-oxoglutarate oxygenases and related double-stranded beta-helix fold proteins

J Inorg Biochem. 2006 Apr;100(4):644-69. doi: 10.1016/j.jinorgbio.2006.01.024. Epub 2006 Mar 2.

Abstract

Mononuclear non-heme ferrous iron dependent oxygenases and oxidases constitute an extended enzyme family that catalyze a wide range of oxidation reactions. The largest known sub-group employs 2-oxoglutarate as a cosubstrate and catalysis by these and closely related enzymes is proposed to proceed via a ferryl intermediate coordinated to the active site via a conserved HXD/E...H motif. Crystallographic studies on the 2-oxoglutarate oxygenases and related enzymes have revealed a common double-stranded beta-helix core fold that supports the residues coordinating the iron. This fold is common to proteins of the cupin and the JmjC transcription factor families. The crystallographic studies on 2-oxoglutarate oxygenases and closely related enzymes are reviewed and compared with other metallo-enzymes/related proteins containing a double-stranded beta-helix fold. Proposals regarding the suitability of the active sites and folds of the 2-oxoglutarate oxygenases to catalyze reactions involving reactive oxidizing species are described.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Binding Sites
  • Catalysis
  • Crystallography, X-Ray
  • Iron / chemistry
  • Iron / metabolism
  • Ketoglutaric Acids / chemistry*
  • Ketoglutaric Acids / metabolism
  • Models, Biological
  • Models, Molecular
  • Oxidation-Reduction
  • Oxygenases / chemistry*
  • Oxygenases / metabolism
  • Protein Conformation
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • Ketoglutaric Acids
  • ferryl iron
  • Iron
  • Oxygenases