The nucleocapsid protein of coronavirus infectious bronchitis virus: crystal structure of its N-terminal domain and multimerization properties

Structure. 2005 Dec;13(12):1859-68. doi: 10.1016/j.str.2005.08.021.

Abstract

The coronavirus nucleocapsid (N) protein packages viral genomic RNA into a ribonucleoprotein complex. Interactions between N proteins and RNA are thus crucial for the assembly of infectious virus particles. The 45 kDa recombinant nucleocapsid N protein of coronavirus infectious bronchitis virus (IBV) is highly sensitive to proteolysis. We obtained a stable fragment of 14.7 kDa spanning its N-terminal residues 29-160 (IBV-N29-160). Like the N-terminal RNA binding domain (SARS-N45-181) of the severe acute respiratory syndrome virus (SARS-CoV) N protein, the crystal structure of the IBV-N29-160 fragment at 1.85 A resolution reveals a protein core composed of a five-stranded antiparallel beta sheet with a positively charged beta hairpin extension and a hydrophobic platform that are probably involved in RNA binding. Crosslinking studies demonstrate the formation of dimers, tetramers, and higher multimers of IBV-N. A model for coronavirus shell formation is proposed in which dimerization of the C-terminal domain of IBV-N leads to oligomerization of the IBV-nucleocapsid protein and viral RNA condensation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Coronavirus Nucleocapsid Proteins
  • Crystallography
  • Dimerization
  • Infectious bronchitis virus*
  • Molecular Sequence Data
  • Nucleocapsid / chemistry
  • Nucleocapsid Proteins / chemistry*
  • Nucleocapsid Proteins / metabolism
  • Protein Structure, Tertiary
  • RNA / metabolism

Substances

  • Coronavirus Nucleocapsid Proteins
  • Nucleocapsid Proteins
  • RNA